Stem-loop mdo-mir-106

Accession

MI0012498

Description

Monodelphis domestica mdo-mir-106 precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

519 reads, 15 reads per million, 5 experiments

uuguguAAAAGUGCUUAUAGUGCAGGUAGgucguguaacuACUGCCCUGUGAGCACUUCCAAcaugacc
((((((..((((((((((((.((((.(((.........))))))).))))))))))))...))))))..

Structure

--      -AA            U    G   guc 
  uugugu   AAGUGCUUAUAG GCAG UAG   g
  ||||||   |||||||||||| |||| |||   u
  aguacA   UUCACGAGUGUC CGUC Auc   g
cc      ACC            C    -   aau 

Annotation confidence Not enough data

Genome context

chrX: 35203046-35203114 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdo-mir-106

Mature mdo-miR-106-5p

• Accession: MIMAT0012742
• Description: Monodelphis domestica mdo-miR-106-5p mature miRNA
• Sequence: 7 - AAAAGUGCUUAUAGUGCAGGUAG - 29
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-106-3p

• Accession: MIMAT0026934
• Description: Monodelphis domestica mdo-miR-106-3p mature miRNA
• Sequence: 41 - ACUGCCCUGUGAGCACUUCCAA - 62
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45