Stem-loop sequence bmo-mir-2825

Accession

MI0012420 (change log)

Description

Bombyx mori miR-2825 stem-loop

Literature search

1 open access papers mention bmo-mir-2825
(1 sentences)

Stem-loop

   a     u  -agc      caga   g   aa   -    a  ga  g 
5'  agugc gg    agcuuu    uug gau  uga ggau cu  ug a
    ||||| ||    ||||||    ||| |||  ||| |||| ||  ||  
3'  uuaug cc    ucgaag    agc cua  acu ccug ga  gc g
   g     -  guua      ---a   a   gg   a    -  -a  a 

Deep sequencing

84 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (ASM15162v1; GCA_000151625.1)	Overlapping transcripts
NW_004582032.1: 1982746-1982835 [+]	intergenic
NW_004593418.1: 443-532 [+]	intergenic

Clustered miRNAs

< 10kb from bmo-mir-2825

• bmo-mir-2826: NW_004582032.1: 1982294-1982375 [-]
• bmo-mir-2825: NW_004582032.1: 1982746-1982835 [+]

Database links

• miRBase Tracker:MI0012420

Mature sequence bmo-miR-2825

• Accession: MIMAT0013736
• Sequence: 61 - caggaucacgaagaagcuau - 80
• Deep sequencing: 19 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000057002B_7091

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).