miRBase entry: bmo-mir-2797d

Stem-loop bmo-mir-2797d


Accession
MI0012373
Description
Bombyx mori bmo-mir-2797d precursor miRNA


Sequence

59 reads, 8 reads per million, 3 experiments
ugucguguuuAUAAGUAGACAUUGUCCGGCUUguuguucaucaagucgaacauaaucugcuuacaaccgugacgagaugcagugcgcggcg
...........((((((((...(((.(((((((........))))))).)))...))))))))...(((((((........)).)))))..

Structure
-----------------ugucguguuuA        CAU   C       uug 
                            UAAGUAGA   UGU CGGCUUg   u
                            ||||||||   ||| |||||||    
                            auucgucu   aca gcugaac   u
gcggcgcgugacguagagcagugccaac        aau   a       uac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
NW_004581747.1: 1275750-1275840 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-2797d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2797d

Accession MIMAT0013701
Description Bombyx mori bmo-miR-2797d mature miRNA
Sequence 11 - AUAAGUAGACAUUGUCCGGCUU - 32
Evidence experimental
Illumina [1], SOLID [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415