miRBase entry: bmo-mir-2797c

Stem-loop bmo-mir-2797c


Accession
MI0012372
Description
Bombyx mori bmo-mir-2797c precursor miRNA
Gene family
MIPF0000911; mir-2797


Sequence

38 reads, 9 reads per million, 3 experiments
uaugauuaacAUAAGUAGGUUUUAUUCAGUUUguguuucauucaaaccguauaaacccuacuuuugcugaugauaa
(((.((((.((.(((((((.(((((.(.(((((.........))))).).))))).))))))).)).)))).))).

Structure
-   g    a  U       U     U A     ugu 
 uau auua cA AAGUAGG UUUAU C GUUUg   u
 ||| |||| || ||||||| ||||| | |||||   u
 aua uagu gu uucaucc aaaua g caaac   c
a   g    c  u       c     u c     uua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
NW_004581747.1: 1275549-1275624 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-2797c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2797c

Accession MIMAT0013700
Description Bombyx mori bmo-miR-2797c mature miRNA
Sequence 11 - AUAAGUAGGUUUUAUUCAGUUU - 32
Evidence experimental
Illumina [1], SOLID [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415