miRBase entry: bmo-mir-2778b

Stem-loop bmo-mir-2778b


Accession
MI0012351
Description
Bombyx mori bmo-mir-2778b precursor miRNA
Gene family
MIPF0000827; mir-2778


Sequence

2727 reads, 503 reads per million, 3 experiments
cacggcaaaaGUUUUUUUGCAUAUCCUGCAcaguuucaguucucgCAGAGUAGGCAAAAAAACAAUUuugacgugag
((((.(((((((((((((((.(((.((((..((........)).)))).))).))))))))))..))))).))))..

Structure
--    g     --          A   C    Ac  uuu 
  cacg caaaa  GUUUUUUUGC UAU CUGC  ag   c
  |||| |||||  |||||||||| ||| ||||  ||    
  gugc guuUU  CAAAAAAACG AUG GACg  uc   a
ga    a     AA          G   A    -c  uug 


Annotation confidence High
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Genome context
NW_004607897.1: 218-294 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-2778b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2778b-5p

Accession MIMAT0013675
Description Bombyx mori bmo-miR-2778b-5p mature miRNA
Sequence 11 - GUUUUUUUGCAUAUCCUGCA - 30
Evidence experimental
Illumina [1], SOLID [2]
Database links

Mature bmo-miR-2778b-3p

Accession MIMAT0013676
Description Bombyx mori bmo-miR-2778b-3p mature miRNA
Sequence 46 - CAGAGUAGGCAAAAAAACAAUU - 67
Evidence experimental
Illumina [1], SOLID [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415