Stem-loop sequence bmo-mir-2778a-3

AccessionMI0012340 (change log)
DescriptionBombyx mori miR-2778a-3 stem-loop
Gene family MIPF0000827; mir-2778
Stem-loop 
   -----c  gg   aa          a  uc    ac  uuu 
5'       ac  caa  guuuuuuugc ua  cugc  ag   c
         ||  |||  |||||||||| ||  ||||  ||    
3'       ug  guu  caaaaaaacg au  gacg  uc   a
   cauuua  -a   aa          c  ga    -c  uug
Get sequence
Deep sequencing
26078 reads, 4.37e+03 reads per million, 3 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (ASM15162v1; GCA_000151625.1) Overlapping transcripts
NW_004581697.1: 2279733-2279809 [+]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2778a-3
bmo-mir-2778a-1NW_004581697.1: 2278993-2279069 [+]
bmo-mir-2778cNW_004581697.1: 2279582-2279658 [+]
bmo-mir-2778a-3NW_004581697.1: 2279733-2279809 [+]
Database links

Mature sequence bmo-miR-2778a-5p

Accession MIMAT0013664
Previous IDsbmo-miR-2778a*
Sequence

11 -  

guuuuuuugcauauccugca

 - 30

Get sequence
Deep sequencing3118 reads, 3 experiments
Evidence experimental; Illumina [1]

Mature sequence bmo-miR-2778a-3p

Accession MIMAT0013665
Previous IDsbmo-miR-2778a
Sequence

46 -  

cagaguacgcaaaaaaacaauu

 - 67

Get sequence
Deep sequencing98079 reads, 3 experiments
Evidence experimental; Illumina [1]
Database links

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).