Stem-loop sequence bmo-mir-375

Accession

MI0012324 (change log)

Description

Bombyx mori miR-375 stem-loop

Literature search

1 open access papers mention bmo-mir-375
(2 sentences)

Stem-loop

   --ca  aa      c     -  uc           u  c 
5'     gc  ggcgac cgagc gg  ugagcaaacug ga a
       ||  |||||| ||||| ||  ||||||||||| || a
3'     cg  ccgcug gcucg cc  gcuuguuugau cu u
   acug  aa      u     g  cc           -  a 

Deep sequencing

18180 reads, 3.5e+03 reads per million, 3 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004581700.1: 2059423-2059501 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0012324

Mature sequence bmo-miR-375-5p

• Accession: MIMAT0013648
• Previous IDs: bmo-miR-375
• Sequence: 11 - acccgagcggucugagcaaacu - 32
• Deep sequencing: 13122 reads, 3 experiments
• Evidence: experimental; Illumina [1-2], SOLID [3]
• Database links:
  • RNAcentral:URS0000100358_7091

Mature sequence bmo-miR-375-3p

• Accession: MIMAT0013649
• Previous IDs: bmo-miR-375*
• Sequence: 47 - uuuguucgccccggcucgugucg - 69
• Deep sequencing: 5058 reads, 3 experiments
• Evidence: experimental; Illumina [1-2], SOLID [3]
• Database links:
  • RNAcentral:URS000036906C_7091

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).
2. PMID:20089182 "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development" Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R BMC Genomics. 11:52(2010).
3. PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).