miRBase entry: bmo-mir-375

Stem-loop bmo-mir-375


Accession
MI0012324
Description
Bombyx mori bmo-mir-375 precursor miRNA

Literature search
1 open access papers mention bmo-mir-375
(2 sentences)

Sequence

17095 reads, 3683 reads per million, 3 experiments
cagcaaggcgACCCGAGCGGUCUGAGCAAACUgugacaauaucuagUUUGUUCGCCCCGGCUCGUGUCGccaagcguca
..((..((((((.(((((((..(((((((((((.((.....)))))))))))))..)).))))).))))))..))....

Structure
--ca  aa      C     -  UC           u  c 
    gc  ggcgAC CGAGC GG  UGAGCAAACUg ga a
    ||  |||||| ||||| ||  ||||||||||| || a
    cg  ccGCUG GCUCG CC  GCUUGUUUgau cu u
acug  aa      U     G  CC           -  a 


Annotation confidence High
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Genome context
NW_004581700.1: 2059423-2059501 [+]

Database links

Mature bmo-miR-375-5p

Accession MIMAT0013648
Description Bombyx mori bmo-miR-375-5p mature miRNA
Sequence 11 - ACCCGAGCGGUCUGAGCAAACU - 32
Evidence experimental
Illumina [1-2], SOLID [3]
Database links

Mature bmo-miR-375-3p

Accession MIMAT0013649
Description Bombyx mori bmo-miR-375-3p mature miRNA
Sequence 47 - UUUGUUCGCCCCGGCUCGUGUCG - 69
Evidence experimental
Illumina [1-2], SOLID [3]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415

  3. PubMed ID: 20089182
    Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
    BMC Genomics (2010) 11:52