miRBase entry: bmo-mir-2758

Stem-loop bmo-mir-2758


Accession
MI0012312
Description
Bombyx mori bmo-mir-2758 precursor miRNA

Literature search
1 open access papers mention bmo-mir-2758
(1 sentences)

Sequence

8128 reads, 2294 reads per million, 3 experiments
aguuuagaagACUUGGUAGAACACGUAGUAAGcagguggaaucuCCCUGCGUGUUCUACCAAGUUAucuagguugg
..((((((.(((((((((((((((((((...(.((((...))))).))))))))))))))))))).))))))....

Structure
--ag      a                   UAA c    g 
    uuuaga gACUUGGUAGAACACGUAG   G aggu  
    |||||| |||||||||||||||||||   | |||| g
    ggaucu UUGAACCAUCUUGUGCGUC   C ucua  
gguu      A                   --C -    a 


Annotation confidence High
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Genome context
NW_004582035.1: 2816104-2816179 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-2758
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2758-5p

Accession MIMAT0013629
Description Bombyx mori bmo-miR-2758-5p mature miRNA
Sequence 11 - ACUUGGUAGAACACGUAGUAAG - 32
Evidence experimental
Illumina [1], SOLID [2]
Database links

Mature bmo-miR-2758-3p

Accession MIMAT0013630
Description Bombyx mori bmo-miR-2758-3p mature miRNA
Sequence 45 - CCCUGCGUGUUCUACCAAGUUA - 66
Evidence experimental
Illumina [1], SOLID [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415