miRBase entry: bmo-mir-279c

Stem-loop bmo-mir-279c


Accession
MI0012299
Description
Bombyx mori bmo-mir-279c precursor miRNA
Gene family
MIPF0000184; mir-279

Literature search
9 open access papers mention bmo-mir-279c
(14 sentences)

Sequence

60535 reads, 11385 reads per million, 3 experiments
ugauauuuguGGGCGAGUUUGCUUCUGGUUCAuguuuuauauugaucaUGACUAGAUCCAUACUCGUCUGcagccaucaa
((((..((((((((((((.((..((((((.((((.((......)).))))))))))..)).))))))))))))..)))).

Structure
-    au            U  CU      U    u  ua 
 ugau  uuguGGGCGAGU UG  UCUGGU CAug uu  u
 ||||  |||||||||||| ||  |||||| |||| ||   
 acua  gacGUCUGCUCA AC  AGAUCA GUac ag  a
a    cc            U  CU      -    u  uu 


Annotation confidence Not enough data
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Genome context
NW_004581681.1: 2936836-2936915 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-279c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-279c-5p

Accession MIMAT0013610
Description Bombyx mori bmo-miR-279c-5p mature miRNA
Sequence 11 - GGGCGAGUUUGCUUCUGGUUCA - 32
Evidence experimental
Illumina [1]
Database links

Mature bmo-miR-279c-3p

Accession MIMAT0013611
Description Bombyx mori bmo-miR-279c-3p mature miRNA
Sequence 49 - UGACUAGAUCCAUACUCGUCUG - 70
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148