miRBase entry: bmo-mir-308

Stem-loop bmo-mir-308


Accession
MI0012296
Description
Bombyx mori bmo-mir-308 precursor miRNA
Gene family
MIPF0000171; mir-308


Sequence

49498 reads, 9242 reads per million, 3 experiments
cguuuccacgCGUGGUAUUAUUCUUGUGAAUGUguuuuagcuacAAUCACAGGAUAAUACUGCGAGuggcgguguc
.....((((.(((((((((((.(((((((.(((((....)).))).)))))))))))))))))).)))).......

Structure
--cguuu    g           U       A   -  u 
       ccac CGUGGUAUUAU CUUGUGA UGU gu u
       |||| ||||||||||| ||||||| ||| ||  
       gguG GCGUCAUAAUA GGACACU Aca cg u
cuguggc    A           -       A   u  a 


Annotation confidence High
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Genome context
NW_004582010.1: 8094179-8094254 [-]

Database links

Mature bmo-miR-308-5p

Accession MIMAT0013604
Description Bombyx mori bmo-miR-308-5p mature miRNA
Sequence 11 - CGUGGUAUUAUUCUUGUGAAUGU - 33
Evidence experimental
Illumina [1], SOLID [2]
Database links

Mature bmo-miR-308-3p

Accession MIMAT0013605
Description Bombyx mori bmo-miR-308-3p mature miRNA
Sequence 45 - AAUCACAGGAUAAUACUGCGAG - 66
Evidence experimental
Illumina [1], SOLID [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415