miRBase entry: bmo-mir-33

Stem-loop bmo-mir-33


Accession
MI0012293
Description
Bombyx mori bmo-mir-33 precursor miRNA
Gene family
MIPF0000070; mir-33

Literature search
4 open access papers mention bmo-mir-33
(5 sentences)

Sequence

1047 reads, 192 reads per million, 3 experiments
uaaagcgagaGUGCAUUGUAGUUGCAUUGCAccgguuccauuaacgugCAAUAUGACUACAAGGCAAAUCccgaauuagu
(((..((.((.(((.(((((((((.(((((((.(..........)))))))).))))))))).)))..)).))..)))..

Structure
--   ag  a  -G   A         C       c guuc 
  uaa  cg ga  UGC UUGUAGUUG AUUGCAc g    c
  |||  || ||  ||| ||||||||| ||||||| |     
  auu  gc CU  ACG AACAUCAGU UAACgug c    a
ug   aa  c  AA   G         A       - aauu 


Annotation confidence High
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Genome context
NW_004582008.1: 9552124-9552203 [+]

Database links

Mature bmo-miR-33-5p

Accession MIMAT0013599
Description Bombyx mori bmo-miR-33-5p mature miRNA
Sequence 11 - GUGCAUUGUAGUUGCAUUGCA - 31
Evidence experimental
Illumina [1], SOLID [2]
Database links

Mature bmo-miR-33-3p

Accession MIMAT0013600
Description Bombyx mori bmo-miR-33-3p mature miRNA
Sequence 49 - CAAUAUGACUACAAGGCAAAUC - 70
Evidence experimental
Illumina [1], SOLID [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415