Stem-loop sequence bmo-mir-33

Accession

MI0012293 (change log)

Description

Bombyx mori miR-33 stem-loop

Gene family

MIPF0000070; mir-33

Literature search

4 open access papers mention bmo-mir-33
(5 sentences)

Stem-loop

   --   ag  a  -g   a        gc       cg   c 
5'   uaa  cg ga  ugc uuguaguu  auugcac  guu c
     |||  || ||  ||| ||||||||  |||||||  ||| a
3'   auu  gc cu  acg aacaucag  uaacgug  caa u
   ug   aa  c  aa   g        ua       --   u 

Deep sequencing

1104 reads, 100 reads per million, 3 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582008.1: 9552124-9552203 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0012293

Mature sequence bmo-miR-33-5p

• Accession: MIMAT0013599
• Previous IDs: bmo-miR-33
• Sequence: 11 - gugcauuguaguugcauugca - 31
• Deep sequencing: 976 reads, 3 experiments
• Evidence: experimental; Illumina [1], SOLID [2]
• Database links:
  • RNAcentral:URS0000483184_7091

Mature sequence bmo-miR-33-3p

• Accession: MIMAT0013600
• Previous IDs: bmo-miR-33*
• Sequence: 49 - caauaugacuacaaggcaaauc - 70
• Deep sequencing: 128 reads, 3 experiments
• Evidence: experimental; Illumina [1], SOLID [2]
• Database links:
  • RNAcentral:URS000005364E_7091

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).
2. PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).