Stem-loop isc-mir-317

Accession

MI0012279

Description

Ixodes scapularis isc-mir-317 precursor miRNA

Gene family

MIPF0000144; mir-317

Literature search

1 open access papers mention isc-mir-317
(1 sentences)

Sequence

uucgacauggccucgccugacaguguaccacccugaguucccacgugcguuugcccagugUGAACACAGCUGGUGGUAUAUCAGUcagucgcggcaucuac
.........(((.((.(((((.(((((((((((((.((((.(((..((....))...))).)))).)))..))))))))))..))))).)).)))......

Structure

uucgacaug   u  c     -a          --   a    c   -gu  g 
         gcc cg cugac  guguaccacc  cug guuc cac   gc u
         ||| || |||||  ||||||||||  ||| |||| |||   ||  
         cgg gc gacUG  UAUAUGGUGG  GAC CAAG gug   cg u
---caucua   c  u     AC          UC   A    U   acc  u 

Annotation confidence Not enough data

Genome context

DS891538: 57423-57523 [-]

Mature isc-miR-317

• Accession: MIMAT0012699
• Description: Ixodes scapularis isc-miR-317 mature miRNA
• Sequence: 61 - UGAACACAGCUGGUGGUAUAUCAGU - 85
• Evidence: not_experimental

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68