miRBase entry: isc-mir-252b

Stem-loop isc-mir-252b


Accession
MI0012271
Description
Ixodes scapularis isc-mir-252b precursor miRNA
Gene family
MIPF0000285; mir-252

Literature search
1 open access papers mention isc-mir-252b
(1 sentences)

Sequence

cauguguguuuuaaguccuUUAAGUAGUAGUGCCGCAGGUAagggcuuggcacugguaccugcacacaacugcugacugaugaaauccacugaaacgcaac
....(((((((((((((.....((((((.(((..(((((((.((((...)).))..))))))).))).))))))))))............)))))))))..

Structure
caug         ------------    cuUUA      A   CC       -a  -  u 
    uguguuuua            aguc     AGUAGU GUG  GCAGGUA  gg gc  
    |||||||||            ||||     |||||| |||  |||||||  || || u
    acgcaaagu            ucag     ucguca cac  cguccau  uc cg  
--ca         caccuaaaguag    -----      a   -a       gg  a  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature isc-miR-252b

Accession MIMAT0012691
Description Ixodes scapularis isc-miR-252b mature miRNA
Sequence 20 - UUAAGUAGUAGUGCCGCAGGUA - 41
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68