miRBase entry: isc-mir-219

Stem-loop isc-mir-219


Accession
MI0012270
Description
Ixodes scapularis isc-mir-219 precursor miRNA
Gene family
MIPF0000044; mir-219

Literature search
1 open access papers mention isc-mir-219
(1 sentences)

Sequence

acggaaccaguuccaagcugUGAUUGUCCAAACGCAAUUCUUgugcgaucguuaccaagaacugugucgggacaucaggguuuggaacugauugcgacaca
.((.((.((((((((((((.((((.((((..(((((.((((((.((....))...)))))).)))))..)))))))).)))))))))))).)).)).....

Structure
----a  g  c            g    U    AA     A      --u  g 
     cg aa caguuccaagcu UGAU GUCC  ACGCA UUCUUg   gc a
     || || |||||||||||| |||| ||||  ||||| ||||||   ||  
     gc uu gucaagguuugg acua cagg  ugugu aagaac   ug u
acaca  g  a            g    -    gc     c      cau  c 


Annotation confidence Not enough data
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Genome context
DS658596: 21107-21207 [-]

Database links

Mature isc-miR-219

Accession MIMAT0012690
Description Ixodes scapularis isc-miR-219 mature miRNA
Sequence 21 - UGAUUGUCCAAACGCAAUUCUU - 42
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68