miRBase entry: isc-mir-100

Stem-loop isc-mir-100


Accession
MI0012263
Description
Ixodes scapularis isc-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
1 open access papers mention isc-mir-100
(6 sentences)

Sequence

aagaucggagcgcccgcccuAACCCGUAGAUCCGAACUUGUGUccgcgcgaugcaaagcacaaguuccccucugcgggucugggcuggucgcuugccauuc
.......(((((((.((((..(((((((((...((((((((((..((.....))...))))))))))...)))))))))..)))).)).))))).......

Structure
aagaucg     -  c    uA         UCC          -cc  g 
       gagcg cc gccc  ACCCGUAGA   GAACUUGUGU   gc c
       ||||| || ||||  |||||||||   ||||||||||   || g
       uucgc gg cggg  ugggcgucu   cuugaacacg   cg a
cuuaccg     u  u    uc         ccc          aaa  u 


Annotation confidence Not enough data
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Genome context
DS978597: 252465-252565 [-]

Database links

Mature isc-miR-100

Accession MIMAT0012683
Description Ixodes scapularis isc-miR-100 mature miRNA
Sequence 21 - AACCCGUAGAUCCGAACUUGUGU - 43
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68