Stem-loop isc-mir-1

Accession

MI0012261

Description

Ixodes scapularis isc-mir-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

1 open access papers mention isc-mir-1
(11 sentences)

Sequence

uccguucggaucaccgugcuuccuuacuucccauauguguccccucagagcgguaUGGAAUGUAAAGAAGUAUGGAGuuccgguggacgaca
(((..(((((.(.(((((((((.((((...((((((...((......))...))))))...)))).))))))))).).))))).))).....

Structure

-----   gu     u a         c    uuc      gug  cc 
     ucc  ucgga c ccgugcuuc uuac   ccauau   uc  c
     |||  ||||| | ||||||||| ||||   ||||||   ||   
     agg  ggccu G GGUAUGAAG AAUG   GGUaug   ag  u
acagc   -u     u A         A    UAA      gcg  ac 

Annotation confidence Not enough data

Genome context

DS811420: 416289-416380 [+]

Mature isc-miR-1

• Accession: MIMAT0012681
• Description: Ixodes scapularis isc-miR-1 mature miRNA
• Sequence: 56 - UGGAAUGUAAAGAAGUAUGGAG - 77
• Evidence: not_experimental

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68