miRBase entry: isc-let-7

Stem-loop isc-let-7


Accession
MI0012260
Description
Ixodes scapularis isc-let-7 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention isc-let-7
(12 sentences)

Sequence

gucucuguguguaccugaagUGAGGUAGUAGGUUGUAUAGUugagaacuacaucugccaaggagagcuaacuguacaacuugcuaacuuucuucgggucg
..........(.((((((((.(((.(((((((((((((((((.((..((...(((....)))))..))))))))))))))))))).))).))))))))).

Structure
gucucugugu u        U   G                 g  aa  aca   g 
          g accugaag GAG UAGUAGGUUGUAUAGUu ag  cu   ucu c
          | |||||||| ||| ||||||||||||||||| ||  ||   |||  
          c ugggcuuc uuc aucguucaacaugucaa uc  ga   gga c
---------g -        u   a                 -  ga  ---   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature isc-let-7

Accession MIMAT0012680
Description Ixodes scapularis isc-let-7 mature miRNA
Sequence 21 - UGAGGUAGUAGGUUGUAUAGU - 41
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68