miRBase entry: dpu-mir-34

Stem-loop dpu-mir-34


Accession
MI0012244
Description
Daphnia pulex dpu-mir-34 precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
1 open access papers mention dpu-mir-34
(1 sentences)

Sequence

gggcaaaaguguauugaugguUGGCAGUGUGGUUAGCUGGUUGUGaaauauuuacuugaauccacagccacuauccaaacuguccacugucgaugacacga
........(((((((((((((.((((((.(((.(((.((((((((.................))))))))))).))).)))))).))))))))).))))..

Structure
gggcaaaa    -         U      G   U   C        aaauauu 
        gugu auugauggu GGCAGU UGG UAG UGGUUGUG       u
        |||| ||||||||| |||||| ||| ||| ||||||||       a
        caca uagcuguca cuguca acc auc accgacac       c
------ag    g         c      a   u   -        cuaaguu 


Annotation confidence Not enough data
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Genome context
GL732526.1: 1242035-1242135 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dpu-mir-34
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dpu-miR-34

Accession MIMAT0012663
Description Daphnia pulex dpu-miR-34 mature miRNA
Sequence 22 - UGGCAGUGUGGUUAGCUGGUUGUG - 45
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68