miRBase entry: dpu-mir-1

Stem-loop dpu-mir-1


Accession
MI0012216
Description
Daphnia pulex dpu-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
1 open access papers mention dpu-mir-1
(1 sentences)

Sequence

gcgccuuggcguggguuccgugcuuccuuacuucccauagucaaaugacaaaacguaUGGAAUGUAAAGAAGUAUGGAGcaaaugccgggccau
(.((((.(((((..((((((((((((.((((...((((((((....)))......)))))...)))).))))))))))))..))))))))))..

Structure
-- c    u     gg            c    uuc     ------   a 
  g gccu ggcgu  guuccgugcuuc uuac   ccaua      guc a
  | |||| |||||  |||||||||||| ||||   |||||      |||  
  c cggg ccgua  cGAGGUAUGAAG AAUG   GGUau      cag a
ua -    -     aa            A    UAA     gcaaaa   u 


Annotation confidence Not enough data
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Genome context
GL732523.1: 1720868-1720961 [-]

Database links

Mature dpu-miR-1

Accession MIMAT0012635
Description Daphnia pulex dpu-miR-1 mature miRNA
Sequence 58 - UGGAAUGUAAAGAAGUAUGGAG - 79
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68