miRBase entry: bta-mir-424

Stem-loop bta-mir-424


Accession
MI0012212
Description
Bos taurus bta-mir-424 precursor miRNA
Gene family
MIPF0000164; mir-322

Literature search
11 open access papers mention bta-mir-424
(117 sentences)

Sequence

6872 reads, 90 reads per million, 68 experiments
ucguugacuccgaggggaugCAGCAGCAAUUCAUGUUUUGAagugcuuuaaacgguuCAAAACGUGAGGCGCUGCUAUacccccuugcgaggaagu
.......((((((((((.((.((((((..(((((((((((((.((.......)).)))))))))))))..)))))).)).))))))).))).....

Structure
ucguuga   -       a  C      AA             g  cu 
       cuc cgagggg ug AGCAGC  UUCAUGUUUUGAa ug  u
       ||| ||||||| || ||||||  ||||||||||||| ||  u
       gag guucccc aU UCGUCG  GAGUGCAAAACuu gc  a
--ugaag   c       c  A      CG             g  aa 


Annotation confidence High
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Genome context
chrX: 18288411-18288506 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from bta-mir-424
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-424-5p

Accession MIMAT0013593
Description Bos taurus bta-miR-424-5p mature miRNA
Sequence 21 - CAGCAGCAAUUCAUGUUUUGA - 41
Evidence experimental
cloned [2], Illumina [3]

Mature bta-miR-424-3p

Accession MIMAT0015304
Description Bos taurus bta-miR-424-3p mature miRNA
Sequence 58 - CAAAACGUGAGGCGCUGCUAU - 78
Evidence experimental
cloned [1-2], Illumina [3]

References

  1. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  2. PubMed ID: 19765282
    Identification and characterization of miRNAs expressed in the bovine ovary
    Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D
    BMC Genomics (2009) 10:443

  3. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026