Stem-loop sequence bta-mir-320a-1

Accession

MI0012211 (change log)

Previous IDs

bta-mir-320-1

Description

Bos taurus miR-320a-1 stem-loop

Gene family

MIPF0000163; mir-320

Literature search

15 open access papers mention bta-mir-320a-1
(70 sentences)

Stem-loop

   cccgcggcgucucgcuccccuc         uu       c      g 
5'                       cgccuucuc  cccgguu uucccg a
                         |||||||||  ||||||| ||||||  
3'                       gcgggagag  gggucga aagggc g
   ----------------gaaaaa         uu       a      u 

Deep sequencing

112447 reads, 1.14e+03 reads per million, 78 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr8: 70428971-70429052 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR320-1
• RNAcentral:URS000075E131_9913
• miRBase Tracker:MI0012211

Mature sequence bta-miR-320a

• Accession: MIMAT0003534
• Previous IDs: bta-miR-320
• Sequence: 56 - aaaagcuggguugagagggcga - 77
• Deep sequencing: 224629 reads, 78 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • TargetScanVert:bta-miR-320a

References

1. PMID:19267191 "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning" Long JE, Chen HX Biochem Genet. 47:329-343(2009).
2. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).