miRBase entry: bta-mir-194-1

Stem-loop bta-mir-194-1


Accession
MI0012208
Description
Bos taurus bta-mir-194-1 precursor miRNA
Gene family
MIPF0000055; mir-194

Literature search
6 open access papers mention bta-mir-194-1
(11 sentences)

Sequence

611352 reads, 5679 reads per million, 75 experiments
uucuuaacggcgucaucgauUGUAACAGCAACUCCAUGUGGAcugugcgucaauuuccaguggagaugcuguuacuuuugauggcugccaauucacu
........(((((((((((..(((((((((.((((((.((((..((......)).)))))))))).)))))))))..)))))))).)))........

Structure
uucuuaac   -        uU         A      G    cu  gc 
        ggc gucaucga  GUAACAGCA CUCCAU UGGA  gu  g
        ||| ||||||||  ||||||||| |||||| ||||  ||   
        ccg cgguaguu  cauugucgu gaggug accu  ua  u
ucacuuaa   u        uu         a      -    -u  ac 


Annotation confidence High
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Genome context
chr16: 24405220-24405316 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-194-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-194

Accession MIMAT0009254
Description Bos taurus bta-miR-194 mature miRNA
Sequence 21 - UGUAACAGCAACUCCAUGUGGA - 42
Evidence experimental
cloned [1]

References

  1. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90