Stem-loop sequence bta-mir-1388

AccessionMI0012206 (change log)
DescriptionBos taurus miR-1388 stem-loop
Gene family MIPF0000805; mir-1388
Literature search

8 open access papers mention bta-mir-1388
(12 sentences)

Stem-loop 
   -ccu      ug    - a  a   u c         a  gugagc 
5'     gggcgg  ccuu c gg cug c aaccugaga ug      a
       ||||||  |||| | || ||| | ||||||||| ||      u
3'     ccugcc  ggaa g cc gac g uuggacucu ac      c
   cucc      gu    c c  -   u u         a  agggac
Get sequence
Deep sequencing
16181 reads, 91.4 reads per million, 70 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr13: 54595416-54595507 [+]
intergenic
Database links

Mature sequence bta-miR-1388-5p

Accession MIMAT0013590
Sequence

17 -  

aggacuguccaaccugagaau

 - 37

Get sequence
Deep sequencing12889 reads, 69 experiments
Evidence experimental; cloned [1], Illumina [2]
Predicted targets

Mature sequence bta-miR-1388-3p

Accession MIMAT0013591
Sequence

56 -  

aucucagguuugucagcccgca

 - 77

Get sequence
Deep sequencing3292 reads, 66 experiments
Evidence experimental; cloned [1], Illumina [2]
Predicted targets

References

1
PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).
2
PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).