miRBase entry: bta-mir-1388

Stem-loop bta-mir-1388


Accession
MI0012206
Description
Bos taurus bta-mir-1388 precursor miRNA
Gene family
MIPF0000805; mir-1388

Literature search
8 open access papers mention bta-mir-1388
(14 sentences)

Sequence

10876 reads, 137 reads per million, 67 experiments
ccugggcggugccuucAGGACUGUCCAACCUGAGAAUggugagcauccagggacaAUCUCAGGUUUGUCAGCCCGCAaggugccguccccuc
...((((((((((((..((.(((.(.(((((((((.((...............)).))))))))).).))).))..))))))))))))....

Structure
-ccu            cA  A   U C         A  gugagc 
    gggcggugccuu  GG CUG C AACCUGAGA Ug      a
    ||||||||||||  || ||| | ||||||||| ||      u
    ccugccguggaA  CC GAC G UUGGACUCU ac      c
cucc            CG  C   U U         A  agggac 


Annotation confidence High
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Genome context
chr13: 54595416-54595507 [+]

Database links

Mature bta-miR-1388-5p

Accession MIMAT0013590
Description Bos taurus bta-miR-1388-5p mature miRNA
Sequence 17 - AGGACUGUCCAACCUGAGAAU - 37
Evidence experimental
cloned [1], Illumina [2]

Mature bta-miR-1388-3p

Accession MIMAT0013591
Description Bos taurus bta-miR-1388-3p mature miRNA
Sequence 56 - AUCUCAGGUUUGUCAGCCCGCA - 77
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  2. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026