miRBase entry: bmo-mir-306a

Stem-loop bmo-mir-306a


Accession
MI0012201
Description
Bombyx mori bmo-mir-306a precursor miRNA
Gene family
MIPF0000313; mir-306

Literature search
2 open access papers mention bmo-mir-306a
(23 sentences)

Sequence

271844 reads, 55075 reads per million, 3 experiments
ccgcgggagacggaggcgggcggccgccUCAGGUACUAGGUGACUCUGAguggugccggucuCAGAGCCGCCUCGUGCCUCAGcgcgggcuccgccgacacguccgcc
..(((((.(..(..((((((.(.((((((.((((((.(((((.(((((((..........))))))).))))).)))))).)).)))).)))))))..).).))))).

Structure
cc     a ac ga      c g    -  C      U     A       uggu 
  gcggg g  g  ggcggg g ccgc cU AGGUAC AGGUG CUCUGAg    g
  ||||| |  |  |||||| | |||| || |||||| ||||| |||||||     
  cgccu c  c  ccgccu c ggcg GA UCCGUG UCCGC GAGACuc    c
-c     g -a ag      - g    c  C      C     C       uggc 


Annotation confidence High
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Genome context
NW_004581774.1: 30978-31085 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-306a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-306a-5p

Accession MIMAT0012629
Description Bombyx mori bmo-miR-306a-5p mature miRNA
Sequence 29 - UCAGGUACUAGGUGACUCUGA - 49
Evidence experimental
cloned [1], RT-PCR [1], Illumina [2], SOLID [3]
Database links

Mature bmo-miR-306a-3p

Accession MIMAT0015303
Description Bombyx mori bmo-miR-306a-3p mature miRNA
Sequence 63 - CAGAGCCGCCUCGUGCCUCAG - 83
Evidence experimental
Illumina [2], SOLID [3]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 19699294
    A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
    "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
    "Genomics (2009) 94:438-444

  3. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415