miRBase entry: bmo-mir-2739

Stem-loop bmo-mir-2739


Accession
MI0012188
Description
Bombyx mori bmo-mir-2739 precursor miRNA

Literature search
1 open access papers mention bmo-mir-2739
(1 sentences)

Sequence

78 reads, 29 reads per million, 3 experiments
gcugcaccucggGAGAUGUGGAUAUUAUGGUGUGGAGGgauagaaaccgcguggcuuuaauuucaacauaccauggucucguaacuaccagguguggc
(((((((((.((.((.....((.(((((((((((..(((((.(((.((....)).))).)))))..))))))))))).))....)).)))))))))))

Structure
         c  G  AUGUG  U           GA     a   a  g 
gcugcaccu gg AG     GA AUUAUGGUGUG  GGgau gaa cc c
||||||||| || ||     || |||||||||||  ||||| ||| ||  
cggugugga cc uc     cu ugguaccauac  cuuua uuu gg g
         -  a  -aaug  c           aa     a   c  u 


Annotation confidence Not enough data
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Genome context
NW_004582029.1: 1198265-1198362 [+]

Database links

Mature bmo-miR-2739

Accession MIMAT0012617
Description Bombyx mori bmo-miR-2739 mature miRNA
Sequence 13 - GAGAUGUGGAUAUUAUGGUGUGGAGG - 38
Evidence experimental
cloned [1], RT-PCR [1], SOLID [2]
Database links

References

  1. PubMed ID: 19699294
    A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
    "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
    "Genomics (2009) 94:438-444

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415