miRBase entry: bmo-mir-2731-1

Stem-loop bmo-mir-2731-1


Accession
MI0012179
Description
Bombyx mori bmo-mir-2731-1 precursor miRNA
Gene family
MIPF0000795; mir-2731


Sequence

275 reads, 60 reads per million, 3 experiments
aaaccuaacagaUGCGAGACCAUGGUAUGUGGAaauaaaagccacccgguuuuuaucuuuccacaccaaaagauccacaucucccgaggug
..((((...(((((.(.((.(.((((..(((((((((((((((....)))))))))..))))))))))...).))).)))))....)))).

Structure
aa    -aac     C A  C --A    AU      --         a 
  accu    agaUG G GA C   UGGU  GUGGAa  auaaaagcc c
  ||||    ||||| | || |   ||||  ||||||  |||||||||  
  ugga    ucuac c cu g   acca  caccuu  uauuuuugg c
-g    gccc     a -  a aaa    --      uc         c 


Annotation confidence Not enough data
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Genome context
NW_004581845.1: 71154-71244 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-2731-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2731

Accession MIMAT0012608
Description Bombyx mori bmo-miR-2731 mature miRNA
Sequence 13 - UGCGAGACCAUGGUAUGUGGA - 33
Evidence experimental
cloned [1], RT-PCR [1]
Database links

References

  1. PubMed ID: 19699294
    A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
    "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
    "Genomics (2009) 94:438-444