Stem-loop mtr-MIR2671e

Accession

MI0012034

Description

Medicago truncatula mtr-MIR2671e precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

uuggucccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaacuuauuuuuggguuuucuuuuggucccuuaacuauuaaaaguuucauuuuggucccuugacuuauuuuuugguuucguuuuggucucuuaacuuauuuuuuuguuucauuuuggucccuuaacucuaauacauucauccuaacauaaaggaucaaagagguugacggaggaugaguuaagggaccaaaacgaaaccaaaaaguaaguuaacggaccaaaacgaagcuuuuaauaguuaagggaccaaaacgaaaccaaaaaguaaguuaagggaccaaaacgaaacuuuuaauaguuaagggaccaaaacgaaacuaaaaaauaaguuaagggaccaaaa
((((((((((((((((((((((((((((((.((((((.((((((((((((.((((((.((((((((((((((((((((((((((((.(((((((((.(((((((((((((((((((((((((((((((((((((((((((((.(((((.(((((((((.(((.......................))).))))))))).))..)))))))))))))))))))))))))))))))))))))))))))))))).))))))))).)))))))))))))))))))))))))))).)))))).)))))))))))).)))))).))))))))))))))))))))))))))))))..(..((((........))))..).........

Structure

---------------------------------                              C      a            g      c                            a         c                                             u   --  a         c   acucuaauac 
                                 uuggucccuuaacuaUUAAAAGUUUCGUUU GGUCCc uaacuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuuc uuuuggucc uugacuuauuuuuugguuucguuuuggucucuuaacuuauuuuuu guu  uc uuuuggucc uua          a
                                 |||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||  || ||||||||| |||          u
                                 aaccagggaauugauaauuuucaaagcaaa ccaggg auugaaugaaaa ccaaag aaaaccagggaauugauaauuuucgaag aaaaccagg aauugaaugaaaaaccaaagcaaaaccagggaauugaguaggagg cag  gg gaaacuagg aau          u
aaaaccagggaauugaauaaaaaaucaaagcaa                              a      a            a      c                            c         c                                             -   uu  a         a   acaauccuac 

Annotation confidence Not enough data

Genome context

chr5: 41342486-41342866 [+]

Mature mtr-miR2671e

• Accession: MIMAT0013487
• Description: Medicago truncatula mtr-miR2671e mature miRNA
• Sequence: 16 - UUAAAAGUUUCGUUUCGGUCC - 36
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796