miRBase entry: mtr-MIR2670d

Stem-loop mtr-MIR2670d


Accession
MI0012028
Description
Medicago truncatula mtr-MIR2670d precursor miRNA
Gene family
MIPF0000855; MIR2670


Sequence

ugaucaaucuucuucgggguaaaauagugaguagccgacuuagggaaguaaucaacccuugggauaaguuuaaauauccuuuuuuaaaccccagaaacuuuuuaccguugguaaaaauaaucuucuucggguaaaaaaaaaaccagauuuaaauuuagcucaaugguugaugauguauuuucccCAAGAAGGUUGCUCACUAUUUuaccccacaaagauuuuuc
.((..((((((....(((((((((((((((((((((..(((.((((((..(((((((.(((((.(((((((((((....((((((..((((.((((..((((((((...)))))))).....))))..))))..))))))......))))))))))).))))).))))))).......)))))).)))..)))))))))))))))))))))...))))))..))

Structure
u  uc      cuuc                     ga   a      -----ua       c     a           --aucc      aa    -c    ---ac        g 
 ga  aaucuu    gggguaaaauagugaguagcc  cuu gggaag       aucaacc uuggg uaaguuuaaau      uuuuuu  accc  agaa     uuuuuacc  
 ||  ||||||    |||||||||||||||||||||  ||| ||||||       ||||||| ||||| |||||||||||      ||||||  ||||  ||||     |||||||| u
 cu  uuagaa    ccccauUUUAUCACUCGUUGG  GAA cccuuu       uaguugg aacuc auuuaaauuua      aaaaaa  uggg  ucuu     aaaaaugg  
-  uu      -aca                     AA   C      uauguag       u     g           gaccaa      aa    cu    cuaau        u 


Annotation confidence Not enough data
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Genome context
chr8: 3203936-3204159 [+]

Database links

Mature mtr-miR2670d

Accession MIMAT0013481
Description Medicago truncatula mtr-miR2670d mature miRNA
Sequence 185 - CAAGAAGGUUGCUCACUAUUU - 205
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796