Stem-loop mtr-MIR399q

Accession

MI0012024

Description

Medicago truncatula mtr-MIR399q precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399q
(22 sentences)

Sequence

guaagcaaaucauucaaagggcauaucuccuuuggcagguauaaugggugguugcuaguuuauuuuacaucuauauuaaaauuuuauguguuuauuuaucaaauaaaaaauaaaaaaaacuaucaugguaaacaacuUGCCAAAGGAGAGCUGCUCUUugaguguuuagcuuag
.(((((.((.(((((((((((((..(((((((((((((((...(((((((.................))))))).......((((((...(((((((...)))))))..))))))...((((...)))).....)))))))))))))))..))))))))))))).)).))))).

Structure

g     a  u             ua               auaaugggugguugcuaguuuauuuuacaucuauauuaaaa      gug       a 
 uaagc aa cauucaaagggca  ucuccuuuggcaggu                                         uuuuau   uuuauuu  
 ||||| || |||||||||||||  |||||||||||||||                                         ||||||   ||||||| u
 auucg uu gugaguUUCUCGU  AGAGGAAACCGUuca                                         aaaaua   aaauaaa  
g     a  u             CG               ----------------------acaaaugguacuaucaaaa      -aa       c 

Annotation confidence Not enough data

Genome context

chr1: 30126820-30126993 [+]

Mature mtr-miR399q

• Accession: MIMAT0013477
• Description: Medicago truncatula mtr-miR399q mature miRNA
• Sequence: 138 - UGCCAAAGGAGAGCUGCUCUU - 158
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796