miRBase entry: mtr-MIR2664a

Stem-loop mtr-MIR2664a


Accession
MI0012018
Description
Medicago truncatula mtr-MIR2664a precursor miRNA
Gene family
MIPF0001740; MIR2664


Sequence

uuauaaaaaaaaaaaaguuuAAUUGUGGUGGGUUGACAGUCcaaaacaguuuugaacauacaaucaaucaaaacauuuagaaucaccacaucaauuaacgauuuuaauucauauggaccaaacguggcgauucagaauauuuugauugguuguacgugcaaaacuguuuuggaaugucaacucaccaccauuaaacucaaaaauaaaauaccaauuaugau
...............((((((((.((((((((((((((.(((((((((((((((.((.(((((((((((((((.((((.(((((.((((..................................)))).))))).)))).))))))))))))))).)).))))))))))))))).)))))))))))))).))))))))........................

Structure
---------uuauaaaaaaaaaaa        U              G               a  a               c    a     a    aucaauuaacgauuuu 
                        aguuuAAU GUGGUGGGUUGACA UCcaaaacaguuuug ac uacaaucaaucaaaa auuu gaauc ccac                a
                        |||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||| |||| ||||| ||||                 
                        ucaaauua caccacucaacugu agguuuugucaaaac ug auguugguuaguuuu uaag cuuag ggug                a
uaguauuaaccauaaaauaaaaac        c              a               g  c               a    a     c    caaaccagguauacuu 


Annotation confidence Not enough data
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Genome context
chr6: 22308272-22308492 [-]

Database links

Mature mtr-miR2664a

Accession MIMAT0013471
Description Medicago truncatula mtr-miR2664a mature miRNA
Sequence 21 - AAUUGUGGUGGGUUGACAGUC - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796