Stem-loop mtr-MIR2662

Accession

MI0012016

Description

Medicago truncatula mtr-MIR2662 precursor miRNA

Sequence

uuucauuucacauuuucauuuucaccaaacaacauagaccaaauaaaaaauuaauucuauuauguaagaaauguaaaauaccaagauuuuaucauucuauaaaaguucaaguagcacauaaauacauuuuugaaauaaaaagcaaagaagaaacuuaacaagagaacaaauaugucauuuuauaaaaguuuccauugaguuucuauuaguauuggucuaggugacauagauuuuaauuaguguuuuuauuauguugcgguuugguuugguaugguucgguugguaaaaugaaagccgcaaaccaaaccaaaccaugcgguuGAGUAAAAAUGUGAACCGAAUa
.(((..((((((((((.((((..(((..(((..(((((...(((.....)))...)))))..))).((((..(((((((......)))))))..))))............((((((.(((((.(((((.(((((((............((((((((((...(.((((...((((......))))...)))).).))))))))))..........(((.....)))....)))))))..))))).)))))..))))))(((((((((((((.((...(((((...........))))))).)))))))))))))....))).)))).))))))))))..)))..

Structure

-u   au          c    uc   aaacaacauagaccaaauaaaaaauuaauucuauuauguaagaaauguaaaauaccaagauuuuaucauucuauaaaaguucaa      -c     u     -u       aaaaagcaaagaagaaacuuaacaagagaacaaauaugucauuuu 
  uuc  uucacauuuu auuu  acc                                                                                    guagca  auaaa acauu  uugaaau                                             a
  |||  |||||||||| ||||  |||                                                                                    ||||||  ||||| |||||  |||||||                                             u
  AAG  AAGUGUAAAA UGAG  ugg                                                                                    cguugu  uauuu uguga  aauuuua                                             a
aU   CC          A    -u   ------------------------cguaccaaaccaaaccaaacgccgaaaguaaaaugguuggcuugguaugguuugguuugg      au     u     uu       gauacaguggaucugguuaugauuaucuuugaguuaccuuugaaa 

Annotation confidence Not enough data

Genome context

chr1: 20744212-20744554 [-]

Mature mtr-miR2662

• Accession: MIMAT0013469
• Description: Medicago truncatula mtr-miR2662 mature miRNA
• Sequence: 322 - GAGUAAAAAUGUGAACCGAAU - 342
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796