Stem-loop mtr-MIR2657

Accession

MI0012004

Description

Medicago truncatula mtr-MIR2657 precursor miRNA

Sequence

ccagauuccuugacauucaagaaaaauggugaaaagaagaaauuucaaguuauugugcaagcaagaagugugacuccaaggggaagauaccaauuuggagaacugcaauggacaaauggaaaacacauuguaaggagucccguuacuguucaacgcaaaugaaagauuauuccaaauaguuggauuuaaugugguauuauuggauuauacuaguaugcuucUGUUAUUUCAUCGAUUUUGUUGuuguacuuguugcugu
.(((........(((..(((.((((.(((((((((((((..(((((..(((........)))..)))))((..(((((((.((......))..))))))).))(((((((...............)))))))..((..(((((((..(((((((......(((......)))......))))))).))))).))..))(((((......)))))...)))))....)))))))).)))).))).)))........))).

Structure

c   auuccuug   uu   g    a        ----     aaauuucaaguuauugugcaagcaagaagugugacuccaaggggaagauaccaauuuggagaacugcaauggacaaauggaaaacacauuguaag  gu  -     cu       gcaaau   ag 
 cag        aca  caa aaaa uggugaaa    agaag                                                                                               ga  cc cguua  guucaac      gaa  a
 |||        |||  ||| |||| ||||||||    |||||                                                                                               ||  || |||||  |||||||      |||   
 guc        ugu  GUU UUUU GCUACUUU    Ucuuc                                                                                               uu  gg guaau  uagguug      cuu  u
u   guuguuca   -u   G    A        AUUG     ----------------------------------------------------------------------------guaugaucauauuagguua  au  u     -u       auaaac   au 

Annotation confidence Not enough data

Genome context

chr7: 23479463-23479721 [-]

Mature mtr-miR2657

• Accession: MIMAT0013457
• Description: Medicago truncatula mtr-miR2657 mature miRNA
• Sequence: 222 - UGUUAUUUCAUCGAUUUUGUUG - 243
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796