Stem-loop mtr-MIR2655m

Accession

MI0011999

Description

Medicago truncatula mtr-MIR2655m precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

uucauaaucaauaaaagaucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucgguuuggucccuuuuguugauuuaauucaaaaaaacguuaaguuuagaaccaagcuaauacuaauuaaauaaguuaagggaacaacuaauacuaauuaaaucaguuaagggaccaaaauuuaacguuuuuuugaauuaaauuaacauaaaugacaaauacuuuauauaaaguuaagggauccaaacauaccuuuuauuauuuauggga
(((((((..((((((((....((((.((((((((((((((((.((((((((..(((..........(((((((((((((((((((((((((((((((.(..((.((((.....((((((....((((........)))).....))))))....))))...))..).))))))))))))))))))))))))))))))).....)))..)))))))).)))))))))))))))).))))....))))))))..))))))).

Structure

-       uc        aucC    A                u        cg   uggucccuuu                               a aa  --a    aauac      -aaua    aag 
 uucauaa  aauaaaag    GUUU GGUCCCUUAACUUUAu uaaaguau  guu          uguugauuuaauucaaaaaaacguuaaguuu g  cc   agcu     uaauua     aguu   g
 |||||||  ||||||||    |||| |||||||||||||||| ||||||||  |||          ||||||||||||||||||||||||||||||| |  ||   ||||     ||||||     ||||    
 ggguauu  uuauuuuc    caaa cuagggaauugaaaua auuucaua  cag          acaauuaaauuaaguuuuuuugcaauuuaaa c  gg   uuga     auuaau     ucaa   g
a       ua        caua    c                u        aa   -----uaaau                               a ca  gaa    -cuaa      cauaa    caa 

Annotation confidence Not enough data

Genome context

chr5: 18553085-18553344 [+]

Mature mtr-miR2655m

• Accession: MIMAT0013452
• Description: Medicago truncatula mtr-miR2655m mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796