Stem-loop mtr-MIR2655l

Accession

MI0011998

Description

Medicago truncatula mtr-MIR2655l precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

cccauaaguaauaaaaaaacCGUUUAGGUCCCUUAACUUUAuuuaaaguaucgguuugguccuuucuguuaauuuaauucaaaaaaacguuaaguuuagggaccaaacuaauacuaauuaaauaaguuaaguaaccaaacuaauacuaauuaaauaaguuaaggggccaaaauuuaacguuuuuuugaauuaaauuaauagaagggaccaaaccguuacuuuaaauaaaguuaaggaccaaaacgaaccuuuuauuacuuaaggga
(((.((((((((((((....(((((.(((((.((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((.((..((.((((.....((((((....((((.........)))).....))))))....))))..))..)).)))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))).)))))....)))))))))))).))).

Structure

-   a            aaac     A     C                  u                                              a  ga  -a    aauac      -aaua    aag 
 ccc uaaguaauaaaa    CGUUU GGUCC UUAACUUUAuuuaaagua cgguuugguccuuucuguuaauuuaauucaaaaaaacguuaaguuu gg  cc  aacu     uaauua     aguu   u
 ||| ||||||||||||    ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  ||  ||||     ||||||     ||||   a
 ggg auucauuauuuu    gcaaa ccagg aauugaaauaaauuucau gccaaaccagggaagauaauuaaauuaaguuuuuuugcaauuuaaa cc  gg  uuga     auuaau     ucaa   a
a   a            ccaa     a     -                  u                                              a  gg  aa    -auaa      cauaa    acc 

Annotation confidence Not enough data

Genome context

chr5: 14236286-14236551 [-]

Mature mtr-miR2655l

• Accession: MIMAT0013451
• Description: Medicago truncatula mtr-miR2655l mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796