miRBase entry: mtr-MIR2655k

Stem-loop mtr-MIR2655k


Accession
MI0011997
Description
Medicago truncatula mtr-MIR2655k precursor miRNA
Gene family
MIPF0000813; MIR2655


Sequence

cucauaaguaauaaaagguuCGUUUAGGUCCCUUAACUUUAuuuuaaguaucgguuuaaucauuuauguuaauuuaauucaaaaaagcguuaaguuuagggacgaaacuaauacuaauuaaauaaguuaagggaccaaucuaacacuaauuaaauaaguuaagggaccaaaacuugccguuuuuugaauuaaauuaauagaaaagaucaaaccgauacuuuaaauaaaauuaaaggaccuaaacgaacuuuuuauuacuuauggga
(((((((((((((((((((((((((((((((.((((.(((((((.((((((((((((.(((.(((.((((((((((((((((((((.((.(((((((.((..(..((((.....((((((.....((((.((......))))))..))))))....))))...)..)).))))))).)))))))))))))))))))))).))).))).)))))))))))).))))))).)))).))))))))))))))))))))))))))))))).

Structure
-                               C    C       u            a   a   a                    g  u       a  ga -ga    aauac      aauaa    a  ga 
 cucauaaguaauaaaagguuCGUUUAGGUCC UUAA UUUAuuu aaguaucgguuu auc uuu uguuaauuuaauucaaaaaa cg uaaguuu gg  c   aacu     uaauua     guua gg  c
 ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||| ||| |||||||||||||||||||| || ||||||| ||  |   ||||     ||||||     |||| ||   
 ggguauucauuauuuuucaagcaaauccagg aauu aaauaaa uucauagccaaa uag aaa auaauuaaauuaaguuuuuu gc guucaaa cc  g   uuga     auuaau     caau cu  c
a                               a    a       u            c   a   g                    -  c       a  ag gaa    -auaa      ---ca    -  aa 


Annotation confidence Not enough data
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Genome context
chr4: 20298253-20298518 [-]

Database links

Mature mtr-miR2655k

Accession MIMAT0013450
Description Medicago truncatula mtr-miR2655k mature miRNA
Sequence 21 - CGUUUAGGUCCCUUAACUUUA - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796