Stem-loop sequence mtr-MIR2655f

Accession

MI0011992 (change log)

Description

Medicago truncatula miR2655f stem-loop

Gene family

MIPF0000813; MIR2655

Stem-loop

   -                                               a   c   c                   c           c         agagaccaaacuaauacuaauuaaauaaguuaag 
5'  cccauaaguaauaaaagguccguuuaggucccuuaacuuuauuuaaa uau ggu ugguccuuuuuguuaauuu auucaaaaaaa guuaaguuu                                  g
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||| |||||||||                                  g
3'  ggguauucauuauuuuccaggcaaauccagggaauugaaguaaauuu aua cca accaggaaagacaauuaaa uaaguuuuuuu caauuuaaa                                  a
   a                                               c   a   a                   u           a         accagggaauugaauaaauuaaucauaucaaacc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr2: 11522984-11523249 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011992

Mature sequence mtr-miR2655f

• Accession: MIMAT0013445
• Sequence: 21 - cguuuaggucccuuaacuuua - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).