Stem-loop mtr-MIR2655f

Accession

MI0011992

Description

Medicago truncatula mtr-MIR2655f precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

cccauaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaaauaucggucugguccuuuuuguuaauuucauucaaaaaaacguuaaguuuagagaccaaacuaauacuaauuaaauaaguuaagggaccaaacuauacuaauuaaauaaguuaagggaccaaaauuuaacauuuuuuugaauuaaauuaacagaaaggaccaaaccaauacuuuaaaugaaguuaagggaccuaaacggaccuuuuauuacuuauggga
(((((((((((((((((((((((((((((((((((((((((((((((.(((.(((.(((((((((((((((((((.(((((((((((.(((((((((.(...((.((((.....((((((....((((.........))))....))))))....))))..))...).))))))))).))))))))))).))))))))))))))))))).))).))).))))))))))))))))))))))))))))))))))))))))))))))).

Structure

-                                               a   c   c                   c           c         a aga  -a    aauac      aaua    aag 
 cccauaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaa uau ggu ugguccuuuuuguuaauuu auucaaaaaaa guuaaguuu g   cc  aacu     uaauua    aguu   g
 ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||| ||||||||| |   ||  ||||     ||||||    ||||   g
 ggguauucauuauuuuccaggcaaauccagggaauugaaguaaauuu aua cca accaggaaagacaauuaaa uaaguuuuuuu caauuuaaa c   gg  uuga     auuaau    ucaa   a
a                                               c   a   a                   u           a         a cag  aa    -auaa      caua    acc 

Annotation confidence Not enough data

Genome context

chr2: 11522984-11523249 [-]

Mature mtr-miR2655f

• Accession: MIMAT0013445
• Description: Medicago truncatula mtr-miR2655f mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796