Stem-loop sequence mtr-MIR2655a

Accession

MI0011987 (change log)

Description

Medicago truncatula miR2655a stem-loop

Gene family

MIPF0000813; MIR2655

Stem-loop

   -   a       u       c                              u                                              a  ga  aaacuaau   a   a   a   -ua  gga 
5'  ccc uaaguaa aaaaggu cguuuaggucccuuaacuuuauuuaaagua cgguuugguccuuucuguuaauuuaauucaaaaaaacguuaaguuu gg  cc        acu auu aau agu   ag   c
    ||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  ||        ||| ||| ||| |||   ||    
3'  ggg auuuauu uuuuuca gcaaauccagggaauugaaauaaauuucau gccaaaccagggaagacaauuaaauuaaguuuuuuugcaauuuaaa cc  gg        uga uaa uua uca   uc   c
   a   a       u       a                              u                                              a  ag  -----aau   a   a   a   uaa  aaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 40642836-40643102 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011987

Mature sequence mtr-miR2655a

• Accession: MIMAT0013440
• Sequence: 21 - cguuuaggucccuuaacuuua - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).