Stem-loop mtr-MIR2653a

Accession

MI0011983

Description

Medicago truncatula mtr-MIR2653a precursor miRNA

Gene family

MIPF0000878; MIR2653

Sequence

cgacaacccucuuccaaaUCACGCUGCUGUGAACAUGAUugagguauaugaggaagcucccggacuugacguccguaauguuacaacuccucuggugccacuacacaucaaguuaugccaagccucucuguuugaccaugaucaugccaauugccaagaaugauucuguaauccuuuggguugcugcguuguuuaaaaugacauccagagcuugaugaacaacaauuauuugacugucagcgacgucugugugauugugccagucu
.....................((((((.((.((.(((((((.(((((..((((((((...(((((.....)))))....))).....)))))..)))))......(((((((((....(((((......)))))..((.((((((..............)))))).))((((((...))))))(((.(.((((......)))).))))))))))))).....))))))))).)).).)))))..(.(((.((......))))).).

Structure

---cgacaacccucuuccaaaUCA     - U  G  C       --------------------------------------------------------------------------------------------------------------------------a     au     -----   -ucc     u 
                        CGCUG C GU AA AUGAUug                                                                                                                           gguau  gagga     agc    cggac u
                        ||||| | || || |||||||                                                                                                                           |||||  |||||     |||    ||||| g
                        gcgac g ca uu uauuaac                                                                                                                           ccgug  cuccu     uug    gccug a
ucugaccguguuagugugucugca     u u  g  -       aacaaguaguucgagaccuacaguaaaauuuguugcgucguuggguuuccuaaugucuuaguaagaaccguuaaccguacuaguaccaguuugucucuccgaaccguauugaacuacacauca     gu     caaca   uaau     c 

Annotation confidence Not enough data

Genome context

chr6: 6968353-6968618 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2653a

Mature mtr-miR2653a

• Accession: MIMAT0013436
• Description: Medicago truncatula mtr-miR2653a mature miRNA
• Sequence: 19 - UCACGCUGCUGUGAACAUGAU - 39
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796