Stem-loop mtr-MIR2652l

Accession

MI0011982

Description

Medicago truncatula mtr-MIR2652l precursor miRNA

Gene family

MIPF0000819; MIR2652

Sequence

gcgguuaugaugcauaaggaaaucuuuaugcacucugcauaaaucuagaaaugguuuuggaguacaacucacgaaaaccauuuuuauagcaaaaugguuuuggcauaauuuuaugcagggugcuggaaaccauuaaguauaucuaaugguuuuggaguacaacucacagaaaccauuucuggauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaccauaaccg
.((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((..........(((((((((((......))))))))))).(((((....)))))...(((((.((((((((((........))))))))))..))))).)))).))).)))))))))))))))))))))))))))))))))))))))))))))).))))))))

Structure

g        a                                              -   -    acaacucacgaaaaccauuuuuauagcaaaaugguuuuggcauaauuuuaugcagg     -g          agu 
 cgguuaug ugcauaaggaaaucuuuaugcacucugcauaaaucuagaaaugguu uug gagu                                                        gugcu  gaaaccauua   a
 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||                                                        |||||  ||||||||||    
 gccaauac acguauuccuUUAGGAAUACGUGGGACGUAUuuaggucuuuaccaa gac cuca                                                        cauga  uuuugguaau   u
-        c                                              a   a    -------------------------------------------------------a     gg          cua 

Annotation confidence Not enough data

Genome context

chr4: 45334580-45334804 [+]

Mature mtr-miR2652l

• Accession: MIMAT0013435
• Description: Medicago truncatula mtr-miR2652l mature miRNA
• Sequence: 186 - UAUGCAGGGUGCAUAAGGAUU - 206
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796