Stem-loop mtr-MIR2652k

Accession

MI0011981

Description

Medicago truncatula mtr-MIR2652k precursor miRNA

Gene family

MIPF0000819; MIR2652

Sequence

gguuaccgugcauaaggaaauccuuaugcacuugcauaaaucuaaaaaugguuuuggaguguaacucacauagaccauuuucacaucaaaauaguuuuggcauaauuggguugggauuuaugcagggugcuggaaaccauuaaauacaucuaaugauuuuggaguacaauucacuaaaaccauuuauagauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaccauauaac
.......(((((((((((((((((((((((((((((((((((((.((((((((((((..((((.(((.((.(((.((((..........(((.(((((.((((..(((.((........)).))).))))..))))).)))..........)))).)))))))))))).....)))))))))))).)))))))))))).)))))))))))))))))))))))))........

Structure

-gguuacc                         -            a            ---ag    a   a  u   c    uucacaucaa   a     -g    aa   g  ugg 
        gugcauaaggaaauccuuaugcacu ugcauaaaucua aaaugguuuugg     ugua cuc ca aga cauu          aau guuuu  gcau  uug gu   g
        ||||||||||||||||||||||||| |||||||||||| ||||||||||||     |||| ||| || ||| ||||          ||| |||||  ||||  ||| ||    
        cacguauuccuUUAGGAAUACGUGG ACGUAUuuagau uuuaccaaaauc     acau gag gu uuu guaa          uua caaag  cgug  gac ua   a
caauauac                         G            a            acuua    -   -  -   a    ucuacauaaa   c     gu    -g   g  uuu 

Annotation confidence Not enough data

Genome context

chr4: 43002052-43002283 [-]

Mature mtr-miR2652k

• Accession: MIMAT0013434
• Description: Medicago truncatula mtr-miR2652k mature miRNA
• Sequence: 193 - UAUGCAGGGUGCAUAAGGAUU - 213
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796