Stem-loop mtr-MIR2652f

Accession

MI0011976

Description

Medicago truncatula mtr-MIR2652f precursor miRNA

Gene family

MIPF0000819; MIR2652

Sequence

uguuuucaauugcacccugcuggaucaaagaaaaccauuaaguacaucuaaugauuuuggaguacaacucacagaaaccauuuccacugcaaaaugguuuuagaguccaacucacaaaaacuauuuucacugcaaaauaguuuuggcauaaugggcugggauuUAUGCAGGGUGCAUAAGGAUUcc
.(..(((...((((((((((((((((..((....((((((.((((.(((((.....))))))))).((((...((((((((((........)))))))))).))))..........(((((((((((......)))))))))))....)))))).))..)))))).))))))))))...)))..).

Structure

u uu   aau          -      aa  aaaa      ----------------aguacaucuaaugauuuuggaguaca    aca          cca 
 g  uuc   ugcacccugc uggauc  ag    ccauua                                          acuc   gaaaccauuu   c
 |  |||   |||||||||| ||||||  ||    ||||||                                          ||||   ||||||||||    
 c  AGG   ACGUGGGACG AUuuag  uc    gguaau                                          ugag   uuuugguaaa   u
c UU   AAU          U      gg  ---g      acgguuuugauaaaacgucacuuuuaucaaaaacacucaacc    --a          acg 

Annotation confidence Not enough data

Genome context

chr5: 34904296-34904481 [+]

Mature mtr-miR2652f

• Accession: MIMAT0013429
• Description: Medicago truncatula mtr-miR2652f mature miRNA
• Sequence: 164 - UAUGCAGGGUGCAUAAGGAUU - 184
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796