miRBase entry: mtr-MIR2647a

Stem-loop mtr-MIR2647a


Accession
MI0011964
Description
Medicago truncatula mtr-MIR2647a precursor miRNA
Gene family
MIPF0000887; MIR2647


Sequence

aAUUCACGGGGACGAACCUCCUucguugaaaguuugcuuuauucuuuugauauaucuauccaugauacaaggaaguaaugcauuuaaguucaaucaagcuuggccuucaucagaauuuccguugacgggacuccacaggagguacaaccuuuaaguugauacugagggauggagggaggguugccccuguugaa
..(((((((((.(((.((((((((((((((....(((.(((((.(((((...((((.......))))))))).))))).)))......))))))........((((((....((..(((((....))))).))....)))))).((.((((((.((....)))))))).)))))))))).))).))))).))))

Structure
aA    -     A   A        -----------------------------------------------------------------------------      --aguu   u     c     aua    ua 
  UUCA CGGGG CGA CCUCCUuc                                                                             guugaa      ugc uuauu uuuug   uauc  u
  |||| ||||| ||| ||||||||                                                                             ||||||      ||| ||||| |||||   ||||  c
  aagu guccc guu ggagggag                                                                             uaacuu      acg aauga ggaac   auag  c
--    u     c   g        guagggagucauaguugaauuuccaacauggaggacaccucagggcaguugccuuuaagacuacuuccgguucgaac      gaauuu   u     a     ---    ua 


Annotation confidence Not enough data
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Genome context
chr4: 10427955-10428148 [-]

Database links

Mature mtr-miR2647a

Accession MIMAT0013417
Description Medicago truncatula mtr-miR2647a mature miRNA
Sequence 2 - AUUCACGGGGACGAACCUCCU - 22
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796