Stem-loop mtr-MIR2646b

Accession

MI0011963

Description

Medicago truncatula mtr-MIR2646b precursor miRNA

Gene family

MIPF0001010; MIR2646

Sequence

guccCAUGACAUUUAGUGAUGAUGUgucuguuuuuuuaucaauuaaugugugccacguguguaauuccauuuuuuaaaaaauaaaaaaaugguauuuuucagauuuucagcacuaaauucuauuguuggucacgugccuccuucucucaaaaucugaaaaauacaauuuuuuuauuuuuaaaaaaaauaaaauuacacauguggcacacauuaauugauaaaaaacagacacaucagcauuaaaugucaugggga
.(((((((((((((((((.(((((((((((((((((.(((((((((((((((((((((((((((((..(((((((.((((((((((((((.((((((((((((((((..((((......(((....)))....))))...........)))))))))))))))).))))))))))))))..)))))))..)))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))).

Structure

g                 A                 u                             cc       -a              g                ---------ca    uaaauu   u 
 uccCAUGACAUUUAGUG UGAUGUgucuguuuuuu aucaauuaaugugugccacguguguaauu  auuuuuu  aaaaauaaaaaaau guauuuuucagauuuu           gcac      cua u
 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  |||||||  |||||||||||||| ||||||||||||||||           ||||      |||  
 gggguacuguaaauuac acuacacagacaaaaaa uaguuaauuacacacgguguacacauuaa  uaaaaaa  uuuuuauuuuuuua cauaaaaagucuaaaa           cgug      ggu g
a                 g                 -                             aa       aa              a                cucucuuccuc    --cacu   u 

Annotation confidence Not enough data

Genome context

chr5: 3631562-3631816 [+]

Mature mtr-miR2646b

• Accession: MIMAT0013416
• Description: Medicago truncatula mtr-miR2646b mature miRNA
• Sequence: 5 - CAUGACAUUUAGUGAUGAUGU - 25
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796