Stem-loop mtr-MIR2643a

Accession

MI0011958

Description

Medicago truncatula mtr-MIR2643a precursor miRNA

Sequence

aaauaguugcugcugaauaUUUGGGAUCAGAAAUUAGAGAgccaccuuggcuuaacuaugagaugaauugggguccaagggaagggccuaaagguccaaaacaaaaggauuuuuggaaaggagacgaacggugagucguucuuaugauguuuuucacccgugauugaccuuuuguuuaauauucaagucuggcuugguuguguauuuuuuuuucuuauuguuuuuguauacccuauua
.(((((....(((.(((((..(((((..(((((.((.(.(((((....((((..(((.((((.(((((.((((((((.(((((((((((((((((((.........)))))))))).........(((((......))))).......))))))).))..))...))))))..)))))...)))))))..))))))))).).)).)))))..))))).)))))..)))....))))).

Structure

a     uugc   -u     UU     UC     U  G G     ccuu    ua   a    --a     -u      ---  -a  -       --------------------------------          aaa 
 aauag    ugc  gaaua  UGGGA  AGAAA UA A Agcca    ggcu  acu ugag   ugaau  gggguc   ca  gg gaagggc                                cuaaaggucc   a
 |||||    |||  |||||  |||||  ||||| || | |||||    ||||  ||| ||||   |||||  ||||||   ||  || |||||||                                ||||||||||   c
 uuauc    aug  uuugu  auucu  uuuuu au u uuggu    ucgg  uga acuu   auuug  uuccag   gu  cc cuuuuug                                gguuuuuagg   a
a     ccau   uu     -u     uu     u  g g     ----    uc   -    aua     uu      uua  gc  a       uaguauucuugcugaguggcaagcagaggaaa          aaa 

Annotation confidence Not enough data

Genome context

chr2: 19533371-19533608 [-]

Mature mtr-miR2643a

• Accession: MIMAT0013411
• Description: Medicago truncatula mtr-miR2643a mature miRNA
• Sequence: 20 - UUUGGGAUCAGAAAUUAGAGA - 40
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796