Stem-loop mtr-MIR2641

Accession

MI0011956

Description

Medicago truncatula mtr-MIR2641 precursor miRNA

Sequence

uGUUUGAUCCUUUACGUUUAUucuucguuuuagguaggagauguaaauuucuucaugcaaauccucgugaaaagaaaaaaaaaaaaacaucagcauggaaggaacauagaaaaggagaauaagaccaaguuggaucaccccuaaaaaaaaagaucaaguuggaucuuuucucucauaagguacaaucgauuucuauugugauugauuuuuucauggaugaaugaaaggguu
.....((((((((.((((((((((((.(((((.(.((((..((((..........))))..))))).))))).)))....((((((.(((((..(((((((............((((((.((((((((.(((.(((...............)))))).)))).))))))))))................)))))))..))).)).))))))...)))))))))))))))))

Structure

uGUUU        A         uucguuuuagguaggagauguaaauuucuucaugcaaauccucgugaaaagaaaaaa      a  -   gc       ----gaacauagaaaa      u    -    g   g   accccu 
     GAUCCUUU CGUUUAUuc                                                         aaaaaa ca uca  auggaag                ggagaa aaga ccaa uug auc      a
     |||||||| |||||||||                                                         |||||| || |||  |||||||                |||||| |||| |||| ||| |||      a
     uugggaaa guaaguagg                                                         uuuuuu gu agu  uaucuuu                ucucuu uucu gguu aac uag      a
-----        -         ------------------------------------------------------uac      a  u   gu       agcuaacauggaauac      -    a    g   -   aaaaaa 

Annotation confidence Not enough data

Genome context

chr4: 1951990-1952220 [+]

Mature mtr-miR2641

• Accession: MIMAT0013409
• Description: Medicago truncatula mtr-miR2641 mature miRNA
• Sequence: 2 - GUUUGAUCCUUUACGUUUAU - 21
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796