Stem-loop mtr-MIR2632c

Accession

MI0011945

Description

Medicago truncatula mtr-MIR2632c precursor miRNA

Gene family

MIPF0001203; MIR2632

Sequence

agaccauuugaauuuucgucCCUGAAGUUACUAAUCCUUCCAauaugccccugcaaauauuaaucauuugacuuuugaucauaauuacaucugauuaguaacuucagugaugaaaauucaagugaccuauauuuggagggaugaaagaccuauuuaagcaaaccaccuagcccaaucaucacuugccacaugggcaccacgucgcuaaugacaacccaccucaccaaaaaaaccuaauuaggagcaaaagucaaaugauuaauauuuacgggggcagauugaaaggauuaguaacuucagggacuaaaauucaaaugaccua
....((((((((((((.((((((((((((((((((((((.((((.((((((((.(((((((((((((((((((((((.((.((((((((.((((.........)))))).(((....))).(((.(((((...(((((((((((..(..(((...............)))..)..))))).))).))).))))))))...(((......)))......................)))))).)).))))))))))))))))))))))).)))))))).)))).)))))))))))))))))))))).)))))))))))).....

Structure

-agac            c                      C    a        c                       a  a      ---caucugauuaguaacuucagugaugaaaauucaa   a     auu   -   -     aa ac   uuuaag 
     cauuugaauuuu gucCCUGAAGUUACUAAUCCUU CAau ugccccug aaauauuaaucauuugacuuuug uc uaauua                                     gug ccuau   ugg agg gauga  g  cua      c
     |||||||||||| |||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| || ||||||                                     ||| |||||   ||| ||| |||||  |  |||      a
     guaaacuuaaaa cagggacuucaaugauuaggaa guua acgggggc uuuauaauuaguaaacugaaaac ag auuaau                                     cac gggua   acc uuc cuacu  c  gau      a
aucca            u                      a    g        a                       g  g      ccaaaaaaaccacuccacccaacaguaaucgcugcac   -     --c   g   a     aa cc   ccacca 

Annotation confidence Not enough data

Genome context

chr4: 46415896-46416217 [+]

Mature mtr-miR2632c

• Accession: MIMAT0013398
• Description: Medicago truncatula mtr-miR2632c mature miRNA
• Sequence: 21 - CCUGAAGUUACUAAUCCUUCCA - 42
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796