miRBase entry: mtr-MIR2631

Stem-loop mtr-MIR2631


Accession
MI0011942
Description
Medicago truncatula mtr-MIR2631 precursor miRNA


Sequence

ugugccacguggaccaaucaUGACACGCCACGUGGCACACUagaagacuaaauuuugagaguuugaaguuaaaagauauuucguccacacuuuugguaaauaaaauuuaauuauuaaaacugucaaugauaaaaaaaaauucuuuuucuuaaaaaaaaaaaaaacucauuuaauuauuaauuuaacaauuugguguacugguacacucaaauuuuuggauguaccauagaauuugccuuauuuuaauuuauuuauuucaauuauaaaauuuuguuuuuagugugccacaugucguguuaugauuguccacguggcacac
((((((((((((((.((((((((((((.((.(((((((((((((.(((.((((((((.....(((((((.((((((....((((..(((.(((((((((.(((...))).))))))))).)))..))))...........))))))...............................(((.((((.(((..((((...(((((((.((((....)))).))))))).......))))..))))))).)))...)))))))...)))))))).)))))))))))))))).)).)))))))))))))))))))))))))).

Structure
-              c            C  C             a   u        agagu       ----------------------------------------------------------------------------------------------------------u      -------uauu    cc   c         a   a 
 ugugccacguggac aaucaUGACACG CA GUGGCACACUaga gac aaauuuug     uugaagu                                                                                                           aaaaga           ucgu  aca uuuugguaa uaa  
 |||||||||||||| |||||||||||| || ||||||||||||| ||| ||||||||     |||||||                                                                                                           ||||||           ||||  ||| ||||||||| ||| a
 acacggugcaccug uuaguauugugc gu caccgugugauuu uug uuuaaaau     aacuuua                                                                                                           uuuucu           agua  ugu aaaauuauu auu  
c              -            u  a             -   u        --auu       uuuauuuaauuuuauuccguuuaagauaccauguagguuuuuaaacucacauggucaugugguuuaacaauuuaauuauuaauuuacucaaaaaaaaaaaaaauucu      uaaaaaaaaau    ac   c         a   u 


Annotation confidence Not enough data
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Genome context
chr4: 16639232-16639550 [-]

Database links

Mature mtr-miR2631

Accession MIMAT0013395
Description Medicago truncatula mtr-miR2631 mature miRNA
Sequence 21 - UGACACGCCACGUGGCACACU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796