Stem-loop sequence mtr-MIR2630v

Accession

MI0011941 (change log)

Description

Medicago truncatula miR2630v stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630v
(2 sentences)

Stem-loop

   c  -ua           u        u                      a  a         cau         aaa       cua      ----------uc          -  a 
5'  cc   caaauauagaa auuugguu ugguccuugguauuuuguuuua uc uuguaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uc u
    ||   ||||||||||| |||||||| |||||||||||||||||||||| || |||||||||   |||||||||   |||||||   ||||||            |||||||||| || u
3'  gg   guuuauauuuu uaaaccaa accaggaaccauaaaacaaaau ag aacauuuua   aaguauaac   aaccagg   auuaua            uaaaaucagg ag u
   c  uac           u        u                      c  g         acu         cua       aac      caucuuauaaac          g  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 38608657-38608885 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011941

Mature sequence mtr-miR2630v

• Accession: MIMAT0013394
• Sequence: 21 - ugguuuugguccuugguauuu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).