Stem-loop mtr-MIR2630t

Accession

MI0011939

Description

Medicago truncatula mtr-MIR2630t precursor miRNA

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630t
(2 sentences)

Sequence

cccugcaaaaauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucuuauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucaauuuuacaaggaauaaaacaaaauacaaagguccaaaacccaauuuuuuauauuugcaggga
(((((((((.((((((.(((.((((((((.((((.(((((((((((((.((((((((((((...(((.(((((...(((((((...((((((..(((((((((((........)))))))))))............))))))...)))))))...))))).)))...)))))))))))).))))))))))))).)))).)))))))).))).)))))).))))))))).

Structure

-         a      u   U        U    G             a            cau   u     aaa       cua      ----------uc           cgu 
 cccugcaaa auagaa auu GGUUUUGG CCUU GUAUUUuguuuua uccuuguaaaau   uuc uauug   uuggucc   uaauau            auuuuaguccu   u
 ||||||||| |||||| ||| |||||||| |||| ||||||||||||| ||||||||||||   ||| |||||   |||||||   ||||||            |||||||||||    
 gggacguuu uauuuu uaa ccaaaacc ggaa cauaaaacaaaau aggaacauuuua   aag auaac   aaccagg   auuaua            uaaaaucaggg   u
a         a      u   c        u    a             a            acu   u     cua       aac      caucuuauaaac           agu 

Annotation confidence Not enough data

Genome context

chr7: 208036-208264 [-]

Mature mtr-miR2630t

• Accession: MIMAT0013392
• Description: Medicago truncatula mtr-miR2630t mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796