miRBase entry: mtr-MIR2630q

Stem-loop mtr-MIR2630q


Accession
MI0011936
Description
Medicago truncatula mtr-MIR2630q precursor miRNA
Gene family
MIPF0000814; MIR2630

Literature search
2 open access papers mention mtr-MIR2630q
(2 sentences)

Sequence

ccaugcaaauauauaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauaugaaucaauuuuacaaggacuaaaacaaaauaccaaggaccaaaaccaaauuuuuuauauuugcaggg
((.((((((((((.((.(((((((((((((((((((((((((((((((.((((((((((((...(((((((((...(((((((...((((((..(((((((((((........)))))))))))............))))))...)))))))...)))))))))...)))))))))))).))))))))))))))))))))))))))))))).)).)))))))))))).

Structure
-  a          u  u                               a            cau         aaa       cua      ----------uc           cgu 
 cc ugcaaauaua aa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug   uuggucc   uaauau            auuuuaguccu   u
 || |||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||   |||||||   ||||||            |||||||||||    
 gg acguuuauau uu uaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaac   aaccagg   auuaua            uaaaaucaggg   u
g  -          u  u                               c            acu         cua       aac      caucuuauaaac           agu 


Annotation confidence Not enough data
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Genome context
chr6: 18839111-18839338 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2630q
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2630q

Accession MIMAT0013389
Description Medicago truncatula mtr-miR2630q mature miRNA
Sequence 21 - UGGUUUUGGUCCUUGGUAUUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796